PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g057400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 298aa    MW: 34062.1 Da    PI: 7.9509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g057400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-05100122123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F+++  L  H++ H
  Csa04g057400.1 100 FECHYCFRNFPTSQALGGHQNAH 122
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.23E-596128No hitNo description
PfamPF139122.5E-599124IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.99100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEETNGRRET HDFMNVNVES FSQLPFIRRT PPKEKAAIIR LFGQELVGDN SENISADSSD  60
QTSTKNDESS ENIKDKEKDK DKEKDRDKDK DKDNNNNRRF ECHYCFRNFP TSQALGGHQN  120
AHKRERQHAK RGSMTSYLHH HHQPDPHHVY GFLNSHHHRH YPSWTSEPRY YGGGGHQTSS  180
YYSRSTLPPP PPSNIPPTIN GSPLGLWRVP PSTSANTIHH GVYSASPASV FRTHEQETTK  240
EPHWPYRLMK PNVQDHATKK AQGWVNADVD DDSVTVGITE DNGQDKRGER ERGRVEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0395970.0AY039597.1 Arabidopsis thaliana At2g41940/T6D20.16 mRNA, complete cds.
GenBankAY0560930.0AY056093.1 Arabidopsis thaliana At2g41940/T6D20.16 mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBankU904390.0U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505992.10.0PREDICTED: zinc finger protein 8-like
SwissprotP937511e-136ZFP8_ARATH; Zinc finger protein 8
TrEMBLR0HUG71e-133R0HUG7_9BRAS; Uncharacterized protein
STRINGAT2G41940.11e-133(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.11e-118zinc finger protein 8